The output of ./configure --prefix=$HOME/pd --enable-alsa --enable-jack --enable-fftw --enable-threadedsf follows. Looks a-ok to me. I tried compiling without --enable-fftw and --enable-threadedsf and I still got the same problem. Let me know if there's any more information I can give you to help sort this out.
oops ... i forgot to remove a comment in m_pd.h ... should be fixed ...
cheers ... tim