Have you tried the Makefile Hans put out there a while back? It should let you compile just pix_motion_sector without having to recompile it embedded in GEM's pixes directory. Here's the link to that post:
http://www.mail-archive.com/pd-list@iem.at/msg36532.html
2010/12/10 IOhannes m zmölnig zmoelnig@iem.at:
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On 12/10/2010 07:29 PM, Yvan Volochine wrote:
./Gem.pd_linux: undefined symbol: _ZN3gem3RTE5Array4sizeEv Gem: can't load library
should be fixed in current svn (i forgot to commit a change in the build-system)
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