Yeah, the preferences are kind of a mess still. It's a case of two steps forward, one step back. Basically, you need to open either Path or Startup and click OK to save the prefs.

On Sep 30, 2008, at 2:04 PM, Marko Timlin wrote:

I´m now using Pd version 0.40.3-extended under Windows XP:
Before that I was using Pd-0.39.3-extended and to store any kind of adjustments like smaller latency, soundcard and midi controller I just had to: Go to “File/Startup…” and hit [Save all settings] after changing the latency.
How could I do that now with the newer version?
Anyways the newer version looks really better than the older one :-) Thanks for that.
Marko
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